CAPRI User Guide

• 1. Overview of the CAPRI Platform
  • 1.1. Acknowledge the CAPRI platform / Scientific citations
  • 1.2. Contributors
• 2. Using Slurm
  • 2.1. Slurm Partitions
    • 2.1.1. Which partition should I use?
  • 2.2. Slurm Jobs
    • 2.2.1. Dissection of the job file
    • 2.2.2. Slurm mandatory options
    • 2.2.3. A more complete job
  • 2.3. SLURM Interaction
    • 2.3.1. Submit a job
    • 2.3.2. Checking job status
    • 2.3.3. Checking running jobs
    • 2.3.4. Remove a job
    • 2.3.5. Job accounting
    • 2.3.6. Job efficiency
• 3. SLURM Job Examples
  • 3.1. MPI job
  • 3.2. OpenMP job
  • 3.3. GPU Job
  • 3.4. Singularity Job
  • 3.5. Singularity job using GPU
• 4. SLURM Troubleshooting
• 5. Using Singularity
  • 5.1. Why singularity?
• 6. Singularity workflow
  • 6.1. Building the singularity image
  • 6.2. Running the singularity image locally
  • 6.3. Running the singularity image on CAPRI
• 7. Singularity Examples
  • 7.1. Tensorflow + python packages
    • 7.1.1. Description
    • 7.1.2. Singularity file
    • 7.1.3. Build and run
  • 7.2. Reuse and customize a local image
    • 7.2.1. Description
    • 7.2.2. Singularity file
    • 7.2.3. Build and run
• 8. Connecting Visual Studio Code
  • 8.1. Procedure

Indices and tables

• Index

• Search Page